Abstract: Based on the magnetic charge model, the numerical algorithm of three-dimensional permanent magnets was derived by the finite difference method. Then combining the full three-dimensional particle-in-cell/Monte Carlo algorithm (PIC/MCC), two multi-peak magnetic field configurations, external magnetic filter and tent-shaped filter, were analyzed respectively, and their influences on electron energy distribution were compared. The simulation results show that both configurations can confine the diffusion of particles and can extract negative hydrogen ions; their electron energy distributions are basically similar, presenting double energy state, which are consistent with the basic mechanism of plasma discharge. The former configuration is stronger in confining and can produce more particles,